usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): -11.94844 22.66984 51.27696 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1014 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 519 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 516 Number of spheres polar: 217, nonpolar: 175, out of current total: 516 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -21.94358 -1.97821 12.82975 32.16711 41.32591 61.27229 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 272 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 235 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 183 Spheres center of coords (x y z): -11.4262504371585 23.8563387431694 51.1420012021858 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.65093670911282 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 25