usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 0.418380952380952 16.9872857142857 18.845 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 753 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 488 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 486 Number of spheres polar: 183, nonpolar: 180, out of current total: 486 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.40406 10.39544 7.03728 26.21385 8.84952 28.84179 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 0.0748255605381165 18.7783385650224 19.9787852017937 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.53115677022447 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 21