usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 24.1494761904762 4.43357142857143 3.39352380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 655 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 440 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 440 Number of spheres polar: 142, nonpolar: 154, out of current total: 440 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.20809 33.74337 -2.91366 13.56882 -6.50307 13.33789 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): 24.6991664414414 6.59581761261261 4.89796698198198 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.02904177317703 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 21