usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): 62.9864375 37.4400625 18.1016875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 265 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 235 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 235 Number of spheres polar: 103, nonpolar: 80, out of current total: 235 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 53.17941 72.66017 27.44809 40.16700 8.18677 27.68006 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 110 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 86 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 54 Spheres center of coords (x y z): 63.994412962963 37.2485051851852 17.7756309259259 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 2.55897565223937 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 16