usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 18.2012424242424 -8.57142424242424 10.4922121212121 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1005 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 557 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 549 Number of spheres polar: 205, nonpolar: 207, out of current total: 549 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.22328 28.11863 -18.55886 1.38450 0.54278 20.40807 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 316 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 275 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 237 Spheres center of coords (x y z): 18.7674846413502 -7.7056470464135 11.3366815189873 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.15529307414692 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 33