usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 18.7705428571429 -8.41128571428571 10.9549428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1128 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 632 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 627 Number of spheres polar: 200, nonpolar: 265, out of current total: 627 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.77485 28.67184 -18.36371 1.50216 1.03335 20.65503 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 242 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 195 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 176 Spheres center of coords (x y z): 19.0030020454545 -7.29643715909091 12.58968 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5601253635409 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 35