usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 19.4414864864865 72.3379459459459 22.8594594594595 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1051 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 591 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 588 Number of spheres polar: 203, nonpolar: 229, out of current total: 588 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.47000 28.91537 62.34632 82.09243 12.93506 32.85223 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 340 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 294 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 265 Spheres center of coords (x y z): 19.6997008301887 72.0070829433962 22.3915049811321 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.28337289436443 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 37