usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 28.9493333333333 14.83 16.4338888888889
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 599
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 385
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 377
Number of spheres polar: 155, nonpolar: 136, out of current total: 377
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.43897 38.93382 5.83833 23.51600 6.74997 26.01506
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 190
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 164
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 129
Spheres center of coords (x y z): 29.7418368217054 11.197869379845 18.6227471317829
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.18506843556822
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 9