usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 28.9485555555556 14.8307777777778 16.4343333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 617
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 402
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 395
Number of spheres polar: 165, nonpolar: 141, out of current total: 395
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.44588 38.94383 5.83961 23.50700 6.73925 26.01875
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 201
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 175
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 134
Spheres center of coords (x y z): 29.7510315671642 11.2380908208955 18.5898017910448
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.12817145483412
Final number of output spheres is: 60
Number of polar spheres: 30
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 9