There are 9 ligand heavy atoms Ligand center of coords (x y z): -1.75911111111111 14.461 16.9157777777778 useligsph not on Starting number of spheres from sph/sph cluster 0: 795 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 568 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 565 Number of spheres polar: 311, nonpolar: 155, out of current total: 565 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.69334 9.95866 2.53500 22.01338 4.97120 28.88085 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 177 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 141 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -1.75911111111111 14.461 16.9157777777778 Center point: 104 xyz: -1.87282 14.71683 17.05078 After continuity checking, number of spheres is: 96 Final number of output spheres is: 96 Number of polar spheres: 40 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 29 Final number of spheres that are from crystallographic ligand: 0