usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): -1.75911111111111 14.461 16.9157777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 795 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 483 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 481 Number of spheres polar: 292, nonpolar: 122, out of current total: 481 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.73891 8.00209 4.65389 22.01338 6.92713 26.90853 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 184 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 133 Spheres center of coords (x y z): -2.35011203007519 18.0493240601504 19.0327940601504 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.2788271229015 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 9