usefragsph not on There are 7 ligand heavy atoms Ligand center of coords (x y z): 19.5832857142857 65.1687142857143 13.3177142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 910 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 629 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 627 Number of spheres polar: 322, nonpolar: 241, out of current total: 627 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.71179 29.53124 55.18300 75.14740 3.46660 22.97955 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 293 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 195 Spheres center of coords (x y z): 24.0308798974359 63.6676297435898 10.8325654358974 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.83045984603803 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 7