usefragsph not on There are 7 ligand heavy atoms Ligand center of coords (x y z): 24.8627142857143 24.9874285714286 -2.71328571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 655 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 429 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 428 Number of spheres polar: 141, nonpolar: 148, out of current total: 428 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.87563 34.72176 15.06741 34.93592 -11.57802 7.27124 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 230 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 200 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 181 Spheres center of coords (x y z): 27.4037571823204 23.7190540331492 -4.78241160220994 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98369796911503 Final number of output spheres is: 60 Number of polar spheres: 35 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 7