Distance from surface specified: 1.80 There are 39 ligand heavy atoms Ligand center of coords (x y z): 24.2773846153846 20.4181794871795 28.334717948718 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14801 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 10527 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 10199 Number of spheres polar: 7084, nonpolar: 2424, out of current total: 10199 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.29560 38.27320 6.51020 31.39780 14.33540 42.33220 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1364 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 720 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 689 Spheres center of coords (x y z): 24.4587744557329 23.2567314949202 27.037498693759 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 10.2064454408257 Final number of output spheres is: 200 Number of polar spheres: 113 Number of nonpolar spheres: 64 Number of spheres that are near neither polar nor nonpolar receptor atoms: 23 Final number of spheres that are from crystallographic ligand: 39