usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 38.9382727272727 11.7116363636364 67.1912727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 694 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 321 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 319 Number of spheres polar: 182, nonpolar: 88, out of current total: 319 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 28.98299 48.84501 1.74111 20.70900 57.30559 77.18649 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 115 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 91 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 45 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 11