usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 25.3810769230769 76.9123461538462 83.6137307692308 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1064 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 567 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552 Number of spheres polar: 159, nonpolar: 188, out of current total: 552 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.26684 35.36744 67.27103 86.85722 73.62964 93.53755 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 351 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 312 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 295 Spheres center of coords (x y z): 26.6237661694915 78.8589633898305 84.4799368474577 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0850632452977 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26