usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.0245 49.31605 -55.5557 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1247 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 826 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 826 Number of spheres polar: 248, nonpolar: 306, out of current total: 826 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.03441 24.96250 39.90125 59.18192 -65.49228 -45.58680 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 474 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 413 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 388 Spheres center of coords (x y z): 17.5025909020619 51.114630128866 -54.6096210051547 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.6211439957054 Final number of output spheres is: 60 Number of polar spheres: 34 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 20