usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.07975 49.4454 -55.35095 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1307 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 867 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 865 Number of spheres polar: 292, nonpolar: 347, out of current total: 865 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.13172 25.01065 40.17600 59.42987 -65.34295 -45.36154 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 305 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 248 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 237 Spheres center of coords (x y z): 17.32404 51.5389797046413 -53.9146362025316 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.8927730170118 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 20