usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.24965 49.51095 -55.8106 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1252 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 846 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 846 Number of spheres polar: 281, nonpolar: 315, out of current total: 846 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.26032 25.24803 40.47449 59.49565 -65.80012 -45.83096 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 491 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 427 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 419 Spheres center of coords (x y z): 17.3141217183771 51.8932154892602 -54.0889055369928 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.83339535032053 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 20