usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.18615 49.05395 -55.5501 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1307 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 888 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 888 Number of spheres polar: 283, nonpolar: 362, out of current total: 888 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.44065 25.18548 39.95559 58.98206 -65.37663 -45.59845 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 516 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 439 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 412 Spheres center of coords (x y z): 17.4487784708738 50.5998612864077 -53.9709453398058 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.74881908506565 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 20