usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 19.18390625 46.05153125 -47.2493125 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1679 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1069 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1065 Number of spheres polar: 323, nonpolar: 517, out of current total: 1065 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.24972 29.16029 36.12482 55.94300 -57.24870 -37.36921 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 554 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 477 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 437 Spheres center of coords (x y z): 20.7406513501144 47.6926810755148 -47.9023968878718 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.81021248833008 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 32