usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 16.6094848484848 47.0611515151515 -46.6411515151515 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1561 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 832 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 828 Number of spheres polar: 226, nonpolar: 369, out of current total: 828 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.26305 26.60552 37.66941 57.04064 -56.63302 -36.64600 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 422 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 375 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 348 Spheres center of coords (x y z): 18.9329983908046 48.4786693678161 -47.3607224425287 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.46308927422611 Final number of output spheres is: 60 Number of polar spheres: 11 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 33