usefragsph not on
There are 20 ligand heavy atoms
Ligand center of coords (x y z): 15.4785 47.51 -54.3344
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1368
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 919
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 919
Number of spheres polar: 282, nonpolar: 403, out of current total: 919
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.71175 25.45928 39.38724 57.30224 -64.33390 -44.35717
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 318
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 260
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 248
Spheres center of coords (x y z): 16.87237875 49.5903011693549 -53.0371294758064
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.674834091796
Final number of output spheres is: 45
Number of polar spheres: 14
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 20