usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.1837 49.41815 -55.85325 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1416 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1011 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1011 Number of spheres polar: 260, nonpolar: 518, out of current total: 1011 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.69867 25.14999 39.64700 59.34751 -65.80500 -45.89601 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 538 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 474 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 436 Spheres center of coords (x y z): 17.3910317889908 50.8143414449541 -54.5036112614679 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40445194480024 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 20