usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.40315 47.19595 -53.66325 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1321 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 919 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 919 Number of spheres polar: 259, nonpolar: 380, out of current total: 919 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.44286 25.26467 37.81800 57.10873 -63.57638 -43.66396 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 309 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 257 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 248 Spheres center of coords (x y z): 17.522355 49.4726981854839 -52.169842217742 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.83954272817782 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 20