usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.0303 49.58475 -55.6303 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1307 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 924 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 924 Number of spheres polar: 294, nonpolar: 389, out of current total: 924 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.17380 25.02647 40.40648 59.57395 -65.46767 -45.63433 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 318 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 244 Spheres center of coords (x y z): 16.7530393032787 51.7890484426229 -54.1166391803279 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.67430291250863 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 20