usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.1929 49.54655 -55.6272 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1344 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 890 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 890 Number of spheres polar: 275, nonpolar: 381, out of current total: 890 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.34934 25.18750 40.30840 59.45620 -65.58765 -45.63873 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 315 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 255 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 242 Spheres center of coords (x y z): 16.9272455785124 51.457488553719 -54.3509778512397 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.54303000923049 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 20