usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 15.6957142857143 49.6180952380952 -55.9385714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1218 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 802 Number of spheres polar: 202, nonpolar: 289, out of current total: 802 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.97432 25.66858 40.03676 59.60251 -65.68587 -45.94751 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 309 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 256 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 236 Spheres center of coords (x y z): 17.6639933050847 51.4135223305085 -54.7523776694915 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.41797108914627 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 21