usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 19.1392580645161 53.2265161290323 -52.1367419354839 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1894 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1129 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1129 Number of spheres polar: 272, nonpolar: 458, out of current total: 1129 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.14288 28.92577 43.60727 63.03444 -62.11862 -42.18182 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 662 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 597 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 594 Spheres center of coords (x y z): 19.9879347979798 53.0627937037037 -52.3069442255893 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.23803092539174 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 37 Final number of spheres that are from crystallographic ligand: 31