usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 18.3506285714286 45.9293714285714 -46.2805714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1893 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 885 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 877 Number of spheres polar: 247, nonpolar: 358, out of current total: 877 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 8.44615 28.33274 36.24816 55.91039 -56.22357 -36.28521 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 505 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 432 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 421 Spheres center of coords (x y z): 20.3148535629454 47.4688201662707 -46.0690625653206 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.64103699582656 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 35