usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 19.5589428571429 47.2777714285714 -47.0146285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1920 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1293 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1281 Number of spheres polar: 419, nonpolar: 531, out of current total: 1281 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.57263 29.54931 37.29974 57.06744 -57.01442 -37.04141 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 679 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 558 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 532 Spheres center of coords (x y z): 21.2187656766917 48.4252148308271 -46.3403757894737 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.8509673050478 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 35