usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 19.5435428571429 45.3961142857143 -46.9223428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1807 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1067 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1061 Number of spheres polar: 382, nonpolar: 452, out of current total: 1061 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.59288 29.53005 35.78716 55.37800 -56.88103 -36.92700 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 344 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 275 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 258 Spheres center of coords (x y z): 21.5120181782946 47.0866762015504 -45.9373021317829 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.4729938218872 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 35