usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 14.9326 49.29545 -55.83605 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1209 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 877 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 877 Number of spheres polar: 198, nonpolar: 400, out of current total: 877 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.34174 24.91986 41.30426 59.24863 -65.74957 -45.87260 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 513 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 443 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 430 Spheres center of coords (x y z): 17.1872023488372 51.8167983488372 -55.122908627907 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.99961506987988 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 19 Final number of spheres that are from crystallographic ligand: 20