usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.2072 49.5333 -55.49995 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1421 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 899 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 894 Number of spheres polar: 226, nonpolar: 360, out of current total: 894 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.29203 25.15129 39.55876 59.50312 -65.40778 -45.50817 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 521 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 463 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 425 Spheres center of coords (x y z): 18.2272552705882 51.0026671529412 -54.7625558117647 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.52718176478267 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 20