usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 14.9395 49.29 -55.62065 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1383 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 936 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 930 Number of spheres polar: 254, nonpolar: 366, out of current total: 930 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.97016 24.92976 39.36840 59.25010 -65.58687 -45.62267 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 555 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 470 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 434 Spheres center of coords (x y z): 17.8228861751152 50.9730692857143 -54.876216359447 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.66768259680571 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 20