usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 15.04825 49.61175 -55.84745 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1243 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 802 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 802 Number of spheres polar: 216, nonpolar: 347, out of current total: 802 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.07985 24.79619 40.24026 59.60295 -65.82790 -45.85089 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 477 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 412 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 387 Spheres center of coords (x y z): 17.4467041602067 51.2798669509044 -54.6957544444444 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.48209031349218 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 20