usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 14.9968 49.24675 -55.45445 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1296 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 893 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 893 Number of spheres polar: 263, nonpolar: 349, out of current total: 893 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 5.02859 24.98438 41.26982 59.13018 -65.45192 -45.47694 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 324 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 267 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 260 Spheres center of coords (x y z): 17.1451383846154 51.3709446538462 -54.1529806923077 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.98027492925905 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 20