usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -27.053 37.99515 -7.9032 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1441 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 994 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 992 Number of spheres polar: 287, nonpolar: 461, out of current total: 992 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -37.01411 -17.05312 29.71444 47.98178 -17.87841 2.02663 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 277 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): -25.5652859533074 41.0092104669261 -9.48469509727626 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.79268795870803 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 20