usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 26.4645263157895 -36.9671578947368 -7.27152631578947 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1511 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 868 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 861 Number of spheres polar: 248, nonpolar: 378, out of current total: 861 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 16.51305 36.45179 -46.95206 -30.18959 -17.23092 2.66262 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 471 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 410 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 396 Spheres center of coords (x y z): 25.5081212373737 -39.7283054292929 -8.29053159090908 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.59282168196411 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 19