usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -28.065 9.33226315789474 28.8276315789474 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1323 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 932 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 927 Number of spheres polar: 285, nonpolar: 401, out of current total: 927 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.98191 -18.07157 -0.64504 19.22402 19.10592 38.65245 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 333 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 260 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 226 Spheres center of coords (x y z): -26.6061659734513 5.68906482300885 28.904692920354 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.43467133499421 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 19