usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -27.328619047619 9.77119047619048 27.3065238095238 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1309 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 884 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 884 Number of spheres polar: 252, nonpolar: 386, out of current total: 884 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.06900 -17.34190 -0.15111 19.77008 17.32121 37.01290 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 502 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 435 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 429 Spheres center of coords (x y z): -25.4922475524476 8.05048771561771 26.1222774592075 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.70362721030879 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 21