usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -27.6424545454545 9.64590909090909 26.8352727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1434 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 985 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 985 Number of spheres polar: 212, nonpolar: 505, out of current total: 985 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.47988 -17.70934 -0.34571 19.55334 16.83899 36.58990 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 337 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 279 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): -26.0559484375 6.6181217578125 25.8965978125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.01872458534569 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 22