usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 34.5739375 60.661375 51.54690625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1430 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 787 Number of spheres polar: 164, nonpolar: 401, out of current total: 787 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 24.69921 44.55588 51.74258 70.65203 41.57334 61.54376 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 289 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 241 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 234 Spheres center of coords (x y z): 36.6409523076923 60.8312253846154 51.6600173931624 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67852906173651 Final number of output spheres is: 45 Number of polar spheres: 8 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 32