usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 19.7363870967742 5.21329032258064 -7.4531935483871 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1341 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 673 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 668 Number of spheres polar: 188, nonpolar: 292, out of current total: 668 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.60390 29.67701 -4.77726 14.95918 -17.07768 2.53028 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 244 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 208 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 194 Spheres center of coords (x y z): 22.8890195876289 6.27325793814433 -7.98825793814433 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.04870475606072 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 31