usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): -42.7959677419355 -47.3127419354839 3.07667741935484
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1643
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 707
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 700
Number of spheres polar: 204, nonpolar: 302, out of current total: 700
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -52.76632 -33.00194 -56.73100 -37.33884 -6.91823 12.98709
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 396
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 350
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 340
Spheres center of coords (x y z): -42.9045016470588 -44.6048289705882 4.6199795
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.15672081398005
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 32
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 31