usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -76.8947142857143 -14.2374761904762 40.689380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1485 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 967 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 957 Number of spheres polar: 298, nonpolar: 405, out of current total: 957 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -86.89430 -67.67690 -24.22367 -4.24373 31.20970 50.66129 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 392 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 282 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 273 Spheres center of coords (x y z): -76.5355463003663 -15.7996967765568 41.6776723076923 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.35578077723939 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 21