usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): -76.8947142857143 -14.2374761904762 40.689380952381 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1485 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 967 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 957 Number of spheres polar: 298, nonpolar: 405, out of current total: 957 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -86.89430 -67.67690 -24.22367 -4.24373 31.20970 50.66129 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 538 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 458 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 447 Spheres center of coords (x y z): -76.7778278747204 -15.728324049217 41.4346003355705 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40222147142248 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 21