usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 24.3781428571429 -9.9127619047619 101.97319047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1065 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 709 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 705 Number of spheres polar: 271, nonpolar: 214, out of current total: 705 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.40041 34.29475 -19.85064 -0.30946 92.17342 111.96064 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 262 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 211 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 201 Spheres center of coords (x y z): 24.3713569651741 -12.3746 104.459874427861 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.74030527441965 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 21