usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 24.3781428571429 -9.9127619047619 101.97319047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1065 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 709 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 705 Number of spheres polar: 271, nonpolar: 214, out of current total: 705 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.40041 34.29475 -19.85064 -0.30946 92.17342 111.96064 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 412 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 334 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 320 Spheres center of coords (x y z): 24.364026 -12.2180265625 104.35978540625 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.39804236294515 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 21