usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): 24.21525 -10.3955 101.83045 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 849 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 576 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 571 Number of spheres polar: 191, nonpolar: 168, out of current total: 571 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.34349 34.19365 -20.18833 -2.96167 92.19105 111.82098 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 236 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 198 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 24.3442389017341 -13.7282219075145 103.882506127168 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.33062300903549 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 20